Calculation of 15,000 Human Genomes using GCP
Case studies

Challenge

The R&D company needed experts in GCP and genotyping to process terabytes of human genome data and compare it with reference sequences. This would help speed up the discovery phase.

Solution

To support the project, Quantori Team introduced the GCP infrastructure and the Terra Baer portal environment. Next, we evaluated cutting-edge bioinformatics technologies, including DRAGEN, DeepVariant, and GATK. We established a pipeline to retrieve data from Answer ALS and the 1000 Genomes Project (1KGP) and input it into GATK in GVCF format, streamlining the data processing workflow.

Outcome

We implemented a high-performance joint genotyping pipeline, resulting in the successful genotyping of approximately 5,000 genomes from Answer ALS and the 1000 Genomes Project (1KGP).

GCP

Cloud Engineering

GCP

Article Clasterization Tool to Improve the Bibliography Search

Quantori Team built a high-performance bibliographic tool using the optimized datasets provided by the customer.

HPC

Seamlessly Integrate AWS HPC Platform for Cell Image Analysis

Quantori introduced our HPC (High Performance Computing) platform, optimized the client’s applications for AWS hardware, and migrated the on-premises pipelines to AWS.

HPC

Develop an AWS HPC Platform for Molecular Docking

This powerful platform can scale from small runs with a few thousand ligands up to millions without reconfiguration.

Work space with laptop and Quantori merch

Data Science

Design, Implement and Support Life Science IT Infrastructure, Oligo Design and Ordering

Quantori team built a back-end service as a sophisticated bioinformatic constructor for reaction components and chemical conditions to control PCR and qPCR.