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Quantori blog

October 31, 2024

Empowering Precision Medicine in Breast Cancer: The Role of Biomarkers and Big Data

Scientific Team
Scientific Team
of
Quantori
October marked Breast Cancer Awareness Month, a global initiative to promote regular screenings, early detection, and effective treatment for breast cancer. At Quantori, we are dedicated to developing innovative solutions that enhance cancer data analysis, support more precise scientific insights, and eventually improve patient outcomes. In this blog, we will outline the landscape of breast cancer precision medicine and highlight our work with large-scale cancer datasets.

Breast Cancer Healthcare Challenge

Breast cancer is the most common cancer in women worldwide and the second leading cause of cancer mortality, largely due to its rapid metastasis and tendency for recurrence. In the United States alone, nearly 1 in 8 women (13%) is estimated to develop invasive breast cancer in their lifetime. 

Over the past few decades, there has been a significant shift toward early detection and treatment of breast cancer, particularly through public healthcare campaigns that promote early screening among women of all ages. At the same time, scientific research all over the globe has been dedicated to understanding breast cancer better and improving treatment options.

Breast cancer is particularly challenging due to its heterogeneous nature, with different tumor molecular subtypes creating significant barriers to optimal patient outcomes.

Precision Medicine in Breast Cancer  

That’s why healthcare systems worldwide are shifting to precision medicine. This approach enables more personalized and effective medical treatments by considering the unique characteristics of each patient’s body and tumor, rather than treating all patients with the same therapy.

Precision medicine in breast cancer reshapes the landscape of diagnosis, treatment, and management strategies. It aims to reduce off-target toxicities of chemotherapy while maximizing patient benefits.

Precision medicine is highly dependent on the selection of suitable biomarkers to predict the efficiency of targeted therapy in specific patient groups. Using these biomarkers in clinical decisions helps identify patients who may benefit from therapy, resulting in more personalized and effective treatment.

Biomarkers 

Biomarkers can include specific genes, proteins, or other molecules that indicate how aggressive the cancer is or how likely it is to respond to certain treatments.

A key component here is genomic testing, which examines specific genes, particularly the breast cancer genes BRCA1 and BRCA2, to identify mutations that increase the risk of breast cancer

Precision medicine leverages genetic and molecular profiling, using biomarkers to determine which patients are the most likely to respond to treatments.

To achieve comprehensive molecular portraits of patients there are two different strategies utilized.

The first selects all the significant biomarkers to simplify the data sets and create a comprehensive portrait of cancer. This is a more conservative approach, that requires each biomarker to be validated in clinical trials.

The other approach analyzes multiple biological components at ones, utilizing a combination of high-throughput technologies to integrate data types and provide deeper biological insights. 

Big Data sets and AI-Driven Models

Among cancers, breast cancer is one of the most extensively studied. Researchers today analyze vast volumes of diverse data from genomic sequencing, tumor molecular data, treatment history, and clinical outcomes.

As a result, most omics datasets have been thoroughly explored in the search for new biomarker discoveries. This has led to a shift toward multiomics approaches to gain new insights.

Big data analytics uses advanced computational techniques, to uncover subtle patterns and correlations that traditional analytical methods might lack.

At the same time, AI-driven models help clinicians make informed decisions tailored to each patient. For example, these models can predict how well a treatment will work, identify side effects, forecast disease progression, and design a treatment strategy based on a patient's unique genetic profile.

While the potential of big data and AI in breast cancer research and treatment is promising, some challenges remain, including data privacy, data standardization and the need to validate and apply AI-generated insights in clinical settings.

To fully leverage big data in precision medicine for the fight against breast cancer, strong collaboration among scientists, researchers, data scientists, and engineers is needed.

Quantori Impact

The primary challenges are managing the growing data volume required for meaningful results and advancing AI/ML to enable breakthroughs in multiomics data analysis.

Quantori specialists are already making significant progress in identifying new biomarkers and drug targets through multiomics analysis. Collaborative teams of software developers, ML engineers, and bioinformaticians are opening new possibilities by transforming semi-structured multiomics data into valuable biomedical insights.

Additionally, Quantori has participated in several projects focused on building infrastructure for biomedical data storage, laying a solid foundation for future biomarker and drug discovery.

The future of cancer research relies on the integration of diverse biomedical datasets, a task that necessitates close collaboration between biomedical experts and engineers.

At Quantori, we believe in the power of collaboration to drive breakthroughs in breast cancer research and precision medicine. Our dedicated team of data scientists, data engineers, bioinformaticians, and AI specialists are here to support healthcare organizations, research institutions, and biotech companies in transforming complex biomedical data into actionable insights. If you’re interested in exploring how our innovative solutions can advance your cancer research or clinical projects, reach out to us at contact@quantori.com today.

Scientific Informatics
Data Science
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